IL_5LZA_045

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5LZA|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZA_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1134

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5LZA|1|A|C|1208
5LZA|1|A|U|1209
5LZA|1|A|G|1210
5LZA|1|A|C|1211
5LZA|1|A|G|1212
5LZA|1|A|A|1213
5LZA|1|A|A|1214
5LZA|1|A|G|1215
*
5LZA|1|A|U|1234
5LZA|1|A|G|1235
5LZA|1|A|G|1236
5LZA|1|A|A|1237
5LZA|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20