3D structure

PDB id
5LZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
5LZA|1|a|U|244, 5LZA|1|a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZA_129 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1266
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

5LZA|1|a|G|242
5LZA|1|a|A|243
5LZA|1|a|U|244
5LZA|1|a|U|245
5LZA|1|a|A|246
5LZA|1|a|G|247
*
5LZA|1|a|C|277
5LZA|1|a|G|278
5LZA|1|a|A|279
5LZA|1|a|C|280
5LZA|1|a|G|281
5LZA|1|a|A|282
5LZA|1|a|U|283
5LZA|1|a|C|284

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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