IL_5LZA_165
3D structure
- PDB id
- 5LZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZA_165 not in the Motif Atlas
- Geometric match to IL_4LFB_047
- Geometric discrepancy: 0.1309
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
5LZA|1|a|G|1061
5LZA|1|a|U|1062
5LZA|1|a|C|1063
*
5LZA|1|a|G|1193
5LZA|1|a|U|1194
5LZA|1|a|C|1195
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
- Chain x
- SECIS mRNA
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