IL_5LZA_186

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZA_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1104

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZA|1|A|U|1851
5LZA|1|A|U|1852
5LZA|1|A|A|1853
5LZA|1|A|A|1854
5LZA|1|A|U|1855
5LZA|1|A|U|1856
5LZA|1|A|G|1857
5LZA|1|A|A|1858
5LZA|1|A|U|1859
5LZA|1|A|G|1860
*
5LZA|1|A|U|1882
5LZA|1|A|U|1883
5LZA|1|A|G|1884
5LZA|1|A|A|1885
5LZA|1|A|U|1886
5LZA|1|A|C|1887
5LZA|1|A|G|1888
5LZA|1|A|A|1889
5LZA|1|A|A|1890
5LZA|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains