3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_006 not in the Motif Atlas
Homologous match to IL_7RQB_006
Geometric discrepancy: 0.0939
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

5LZB|1|A|G|188
5LZB|1|A|G|189
5LZB|1|A|A|190
5LZB|1|A|A|191
5LZB|1|A|C|192
5LZB|1|A|U|193
5LZB|1|A|G|194
*
5LZB|1|A|C|201
5LZB|1|A|U|202
5LZB|1|A|A|203
5LZB|1|A|A|204
5LZB|1|A|G|205
5LZB|1|A|U|206
5LZB|1|A|A|207
5LZB|1|A|C|208

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28

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