3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
5LZB|1|A|A|1127
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_037 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.123
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5LZB|1|A|G|1024
5LZB|1|A|G|1025
5LZB|1|A|G|1026
5LZB|1|A|A|1027
5LZB|1|A|A|1028
5LZB|1|A|A|1029
5LZB|1|A|C|1030
*
5LZB|1|A|G|1124
5LZB|1|A|G|1125
5LZB|1|A|A|1126
5LZB|1|A|A|1127
5LZB|1|A|G|1128
5LZB|1|A|A|1129
5LZB|1|A|U|1130
5LZB|1|A|G|1131
5LZB|1|A|U|1132
5LZB|1|A|A|1133
5LZB|1|A|A|1134
5LZB|1|A|C|1135
5LZB|1|A|G|1136
5LZB|1|A|G|1137
5LZB|1|A|G|1138
5LZB|1|A|G|1139
5LZB|1|A|C|1140

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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