IL_5LZB_066

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5LZB|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_066 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZB|1|A|U|1712
5LZB|1|A|A|1713
5LZB|1|A|U|1714
5LZB|1|A|G|1715
5LZB|1|A|U|1716
5LZB|1|A|A|1717
5LZB|1|A|G|1718
*
5LZB|1|A|U|1742
5LZB|1|A|G|1743
5LZB|1|A|A|1744
5LZB|1|A|A|1745
5LZB|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains