IL_5LZB_086

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAGG*CCGACCUUGAAAUACCACCC

Length

39 nucleotides

Bulged bases

5LZB|1|A|U|2118, 5LZB|1|A|C|2178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZB|1|A|G|2110
5LZB|1|A|U|2111
5LZB|1|A|G|2112
5LZB|1|A|U|2113
5LZB|1|A|A|2114
5LZB|1|A|G|2115
5LZB|1|A|G|2116
5LZB|1|A|A|2117
5LZB|1|A|U|2118
5LZB|1|A|A|2119
5LZB|1|A|G|2120
5LZB|1|A|G|2121
5LZB|1|A|U|2122
5LZB|1|A|G|2123
5LZB|1|A|G|2124
5LZB|1|A|G|2125
5LZB|1|A|A|2126
5LZB|1|A|G|2127
5LZB|1|A|G|2128
*
5LZB|1|A|C|2160
5LZB|1|A|C|2161
5LZB|1|A|G|2162
5LZB|1|A|A|2163
5LZB|1|A|C|2164
5LZB|1|A|C|2165
5LZB|1|A|U|2166
5LZB|1|A|U|2167
5LZB|1|A|G|2168
5LZB|1|A|A|2169
5LZB|1|A|A|2170
5LZB|1|A|A|2171
5LZB|1|A|U|2172
5LZB|1|A|A|2173
5LZB|1|A|C|2174
5LZB|1|A|C|2175
5LZB|1|A|A|2176
5LZB|1|A|C|2177
5LZB|1|A|C|2178
5LZB|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains