3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_095 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.2336
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

5LZB|1|A|C|2466
5LZB|1|A|C|2467
5LZB|1|A|A|2468
5LZB|1|A|A|2469
5LZB|1|A|G|2470
*
5LZB|1|A|C|2480
5LZB|1|A|G|2481
5LZB|1|A|A|2482
5LZB|1|A|C|2483
5LZB|1|A|G|2484

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain M
50S ribosomal protein L16

Coloring options:


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