IL_5LZB_134

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

5LZB|1|a|U|368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_134 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.2589

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5LZB|1|a|U|367
5LZB|1|a|U|368
5LZB|1|a|G|369
*
5LZB|1|a|C|392
5LZB|1|a|A|393

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain y

Selenocysteine transfer RNA

Chain z

Selenocysteine-specific elongation factor