IL_5LZB_137

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

5LZB|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_137 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2452

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LZB|1|a|U|409
5LZB|1|a|G|410
5LZB|1|a|A|411
5LZB|1|a|A|412
5LZB|1|a|G|413
5LZB|1|a|A|414
5LZB|1|a|A|415
5LZB|1|a|G|416
*
5LZB|1|a|U|427
5LZB|1|a|G|428
5LZB|1|a|U|429
5LZB|1|a|A|430
5LZB|1|a|A|431
5LZB|1|a|A|432
5LZB|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain z

Selenocysteine-specific elongation factor