3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_141 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.1313
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

5LZB|1|a|C|504
5LZB|1|a|G|505
5LZB|1|a|G|506
5LZB|1|a|C|507
5LZB|1|a|U|508
5LZB|1|a|A|509
5LZB|1|a|A|510
5LZB|1|a|C|511
*
5LZB|1|a|G|540
5LZB|1|a|G|541

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain x
SECIS mRNA

Coloring options:


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