IL_5LZB_164

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5LZB|1|a|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_164 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.1569

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5LZB|1|a|U|1052
5LZB|1|a|G|1053
5LZB|1|a|C|1054
5LZB|1|a|A|1055
5LZB|1|a|U|1056
*
5LZB|1|a|A|1204
5LZB|1|a|U|1205
5LZB|1|a|G|1206

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain n

30S ribosomal protein S14

Chain x

SECIS mRNA