IL_5LZB_174

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5LZB|1|a|C|1400, 5LZB|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_174 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1448

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5LZB|1|a|C|1399
5LZB|1|a|C|1400
5LZB|1|a|G|1401
*
5LZB|1|a|C|1501
5LZB|1|a|A|1502
5LZB|1|a|A|1503
5LZB|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA

Chain x

SECIS mRNA