IL_5LZB_183

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5LZB|1|A|U|846, 5LZB|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_183 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2275

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5LZB|1|A|A|844
5LZB|1|A|A|845
5LZB|1|A|U|846
5LZB|1|A|U|847
5LZB|1|A|C|848
*
5LZB|1|A|G|930
5LZB|1|A|U|931
5LZB|1|A|U|932
5LZB|1|A|A|933
5LZB|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30