IL_5LZB_185

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_185 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1594

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5LZB|1|A|G|1666
5LZB|1|A|G|1667
5LZB|1|A|A|1668
5LZB|1|A|A|1669
5LZB|1|A|C|1670
5LZB|1|A|U|1671
5LZB|1|A|A|1672
5LZB|1|A|G|1673
5LZB|1|A|G|1674
*
5LZB|1|A|C|1990
5LZB|1|A|U|1991
5LZB|1|A|G|1992
5LZB|1|A|U|1993
5LZB|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14