IL_5LZC_045

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5LZC|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_045 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1528

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5LZC|1|A|C|1208
5LZC|1|A|U|1209
5LZC|1|A|G|1210
5LZC|1|A|C|1211
5LZC|1|A|G|1212
5LZC|1|A|A|1213
5LZC|1|A|A|1214
5LZC|1|A|G|1215
*
5LZC|1|A|U|1234
5LZC|1|A|G|1235
5LZC|1|A|G|1236
5LZC|1|A|A|1237
5LZC|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20