IL_5LZC_157

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5LZC|1|a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_157 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1657

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5LZC|1|a|G|933
5LZC|1|a|C|934
5LZC|1|a|A|935
*
5LZC|1|a|U|1380
5LZC|1|a|U|1381
5LZC|1|a|C|1382
5LZC|1|a|C|1383
5LZC|1|a|C|1384

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain v

Transfer RNA; tRNA

Chain x

SECIS mRNA