IL_5LZC_163
3D structure
- PDB id
- 5LZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5LZC|1|a|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZC_163 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1557
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LZC|1|a|U|1052
5LZC|1|a|G|1053
5LZC|1|a|C|1054
5LZC|1|a|A|1055
5LZC|1|a|U|1056
*
5LZC|1|a|A|1204
5LZC|1|a|U|1205
5LZC|1|a|G|1206
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain n
- 30S ribosomal protein S14
- Chain x
- SECIS mRNA
- Chain y
- Selenocysteine transfer RNA
Coloring options: