IL_5LZC_184

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_184 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1775

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5LZC|1|A|G|1666
5LZC|1|A|G|1667
5LZC|1|A|A|1668
5LZC|1|A|A|1669
5LZC|1|A|C|1670
5LZC|1|A|U|1671
5LZC|1|A|A|1672
5LZC|1|A|G|1673
5LZC|1|A|G|1674
*
5LZC|1|A|C|1990
5LZC|1|A|U|1991
5LZC|1|A|G|1992
5LZC|1|A|U|1993
5LZC|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14