IL_5LZC_185

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.111

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZC|1|A|U|1851
5LZC|1|A|U|1852
5LZC|1|A|A|1853
5LZC|1|A|A|1854
5LZC|1|A|U|1855
5LZC|1|A|U|1856
5LZC|1|A|G|1857
5LZC|1|A|A|1858
5LZC|1|A|U|1859
5LZC|1|A|G|1860
*
5LZC|1|A|U|1882
5LZC|1|A|U|1883
5LZC|1|A|G|1884
5LZC|1|A|A|1885
5LZC|1|A|U|1886
5LZC|1|A|C|1887
5LZC|1|A|G|1888
5LZC|1|A|A|1889
5LZC|1|A|A|1890
5LZC|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains