3D structure

PDB id
5LZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
5LZD|1|A|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZD_108 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0848
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5LZD|1|A|G|2737
5LZD|1|A|A|2738
5LZD|1|A|U|2739
5LZD|1|A|A|2740
5LZD|1|A|A|2741
5LZD|1|A|G|2742
*
5LZD|1|A|C|2762
5LZD|1|A|G|2763
5LZD|1|A|A|2764
5LZD|1|A|A|2765
5LZD|1|A|A|2766
5LZD|1|A|C|2767

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain G
50S ribosomal protein L6
Chain J
50S ribosomal protein L13

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