IL_5LZD_139
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CAGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZD_139 not in the Motif Atlas
- Homologous match to IL_5J7L_021
- Geometric discrepancy: 0.1144
- The information below is about IL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33323.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5LZD|1|a|C|440
5LZD|1|a|A|441
5LZD|1|a|G|442
*
5LZD|1|a|C|492
5LZD|1|a|A|493
5LZD|1|a|G|494
5LZD|1|a|A|495
5LZD|1|a|A|496
5LZD|1|a|G|497
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain z
- Selenocysteine-specific elongation factor
Coloring options: