IL_5LZD_190

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_190 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1128

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZD|1|A|U|1851
5LZD|1|A|U|1852
5LZD|1|A|A|1853
5LZD|1|A|A|1854
5LZD|1|A|U|1855
5LZD|1|A|U|1856
5LZD|1|A|G|1857
5LZD|1|A|A|1858
5LZD|1|A|U|1859
5LZD|1|A|G|1860
*
5LZD|1|A|U|1882
5LZD|1|A|U|1883
5LZD|1|A|G|1884
5LZD|1|A|A|1885
5LZD|1|A|U|1886
5LZD|1|A|C|1887
5LZD|1|A|G|1888
5LZD|1|A|A|1889
5LZD|1|A|A|1890
5LZD|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains