3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GG*UAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZE_031 not in the Motif Atlas
Geometric match to IL_5TBW_039
Geometric discrepancy: 0.2606
The information below is about IL_5TBW_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

5LZE|1|A|G|880
5LZE|1|A|G|881
*
5LZE|1|A|U|895
5LZE|1|A|A|896
5LZE|1|A|C|897

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain y
Selenocysteine transfer RNA

Coloring options:


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