IL_5LZE_041

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAG*CAC

Length

36 nucleotides

Bulged bases

5LZE|1|A|U|1061, 5LZE|1|A|U|1066, 5LZE|1|A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZE|1|A|G|1055
5LZE|1|A|G|1056
5LZE|1|A|A|1057
5LZE|1|A|U|1058
5LZE|1|A|G|1059
5LZE|1|A|U|1060
5LZE|1|A|U|1061
5LZE|1|A|G|1062
5LZE|1|A|G|1063
5LZE|1|A|C|1064
5LZE|1|A|U|1065
5LZE|1|A|U|1066
5LZE|1|A|A|1067
5LZE|1|A|G|1068
5LZE|1|A|A|1069
5LZE|1|A|A|1070
5LZE|1|A|G|1071
5LZE|1|A|C|1072
5LZE|1|A|A|1073
5LZE|1|A|G|1074
5LZE|1|A|C|1075
5LZE|1|A|C|1076
5LZE|1|A|A|1077
5LZE|1|A|U|1078
5LZE|1|A|C|1079
5LZE|1|A|A|1080
5LZE|1|A|U|1081
5LZE|1|A|U|1082
5LZE|1|A|U|1083
5LZE|1|A|A|1084
5LZE|1|A|A|1085
5LZE|1|A|A|1086
5LZE|1|A|G|1087
*
5LZE|1|A|C|1102
5LZE|1|A|A|1103
5LZE|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain I

50S ribosomal protein L11

Chain y

Selenocysteine transfer RNA