IL_5LZE_135

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_135 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1372

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LZE|1|a|U|409
5LZE|1|a|G|410
5LZE|1|a|A|411
5LZE|1|a|A|412
5LZE|1|a|G|413
5LZE|1|a|A|414
5LZE|1|a|A|415
5LZE|1|a|G|416
*
5LZE|1|a|U|427
5LZE|1|a|G|428
5LZE|1|a|U|429
5LZE|1|a|A|430
5LZE|1|a|A|431
5LZE|1|a|A|432
5LZE|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4