IL_5LZE_186

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

68 nucleotides

Bulged bases

5LZE|1|A|U|2111, 5LZE|1|A|G|2112, 5LZE|1|A|U|2118, 5LZE|1|A|G|2125, 5LZE|1|A|U|2130, 5LZE|1|A|U|2132, 5LZE|1|A|A|2171, 5LZE|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZE|1|A|C|2103
5LZE|1|A|C|2104
5LZE|1|A|U|2105
5LZE|1|A|U|2106
5LZE|1|A|G|2107
5LZE|1|A|A|2108
5LZE|1|A|U|2109
5LZE|1|A|G|2110
5LZE|1|A|U|2111
5LZE|1|A|G|2112
5LZE|1|A|U|2113
5LZE|1|A|A|2114
5LZE|1|A|G|2115
5LZE|1|A|G|2116
5LZE|1|A|A|2117
5LZE|1|A|U|2118
5LZE|1|A|A|2119
5LZE|1|A|G|2120
5LZE|1|A|G|2121
5LZE|1|A|U|2122
5LZE|1|A|G|2123
5LZE|1|A|G|2124
5LZE|1|A|G|2125
5LZE|1|A|A|2126
5LZE|1|A|G|2127
5LZE|1|A|G|2128
5LZE|1|A|C|2129
5LZE|1|A|U|2130
5LZE|1|A|U|2131
5LZE|1|A|U|2132
5LZE|1|A|G|2133
5LZE|1|A|A|2134
5LZE|1|A|A|2135
5LZE|1|A|G|2136
5LZE|1|A|U|2137
*
5LZE|1|A|A|2154
5LZE|1|A|U|2155
5LZE|1|A|G|2156
5LZE|1|A|G|2157
5LZE|1|A|A|2158
5LZE|1|A|G|2159
5LZE|1|A|C|2160
5LZE|1|A|C|2161
5LZE|1|A|G|2162
5LZE|1|A|A|2163
5LZE|1|A|C|2164
5LZE|1|A|C|2165
5LZE|1|A|U|2166
5LZE|1|A|U|2167
5LZE|1|A|G|2168
5LZE|1|A|A|2169
5LZE|1|A|A|2170
5LZE|1|A|A|2171
5LZE|1|A|U|2172
5LZE|1|A|A|2173
5LZE|1|A|C|2174
5LZE|1|A|C|2175
5LZE|1|A|A|2176
5LZE|1|A|C|2177
5LZE|1|A|C|2178
5LZE|1|A|C|2179
5LZE|1|A|U|2180
5LZE|1|A|U|2181
5LZE|1|A|U|2182
5LZE|1|A|A|2183
5LZE|1|A|A|2184
5LZE|1|A|U|2185
5LZE|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains