IL_5LZF_009

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2793

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5LZF|1|A|C|274
5LZF|1|A|C|275
5LZF|1|A|U|276
5LZF|1|A|G|277
5LZF|1|A|A|278
5LZF|1|A|A|279
5LZF|1|A|U|280
5LZF|1|A|C|281
*
5LZF|1|A|G|359
5LZF|1|A|U|360
5LZF|1|A|G|361
5LZF|1|A|A|362
5LZF|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains