IL_5LZF_030
3D structure
- PDB id
- 5LZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZF_030 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2119
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5LZF|1|A|G|875
5LZF|1|A|C|876
5LZF|1|A|A|877
5LZF|1|A|A|878
5LZF|1|A|G|879
*
5LZF|1|A|C|898
5LZF|1|A|A|899
5LZF|1|A|A|900
5LZF|1|A|C|901
5LZF|1|A|C|902
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain y
- Selenocysteine transfer RNA
Coloring options: