IL_5LZF_034

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_034 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1293

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5LZF|1|A|U|1004
5LZF|1|A|C|1005
5LZF|1|A|C|1006
5LZF|1|A|C|1007
5LZF|1|A|A|1008
5LZF|1|A|A|1009
5LZF|1|A|A|1010
5LZF|1|A|G|1011
*
5LZF|1|A|C|1150
5LZF|1|A|A|1151

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20