IL_5LZF_041

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAG*CAC

Length

36 nucleotides

Bulged bases

5LZF|1|A|U|1061, 5LZF|1|A|U|1066, 5LZF|1|A|A|1070, 5LZF|1|A|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZF|1|A|G|1055
5LZF|1|A|G|1056
5LZF|1|A|A|1057
5LZF|1|A|U|1058
5LZF|1|A|G|1059
5LZF|1|A|U|1060
5LZF|1|A|U|1061
5LZF|1|A|G|1062
5LZF|1|A|G|1063
5LZF|1|A|C|1064
5LZF|1|A|U|1065
5LZF|1|A|U|1066
5LZF|1|A|A|1067
5LZF|1|A|G|1068
5LZF|1|A|A|1069
5LZF|1|A|A|1070
5LZF|1|A|G|1071
5LZF|1|A|C|1072
5LZF|1|A|A|1073
5LZF|1|A|G|1074
5LZF|1|A|C|1075
5LZF|1|A|C|1076
5LZF|1|A|A|1077
5LZF|1|A|U|1078
5LZF|1|A|C|1079
5LZF|1|A|A|1080
5LZF|1|A|U|1081
5LZF|1|A|U|1082
5LZF|1|A|U|1083
5LZF|1|A|A|1084
5LZF|1|A|A|1085
5LZF|1|A|A|1086
5LZF|1|A|G|1087
*
5LZF|1|A|C|1102
5LZF|1|A|A|1103
5LZF|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain I

50S ribosomal protein L11