IL_5LZF_057

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_057 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3675

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5LZF|1|A|U|1474
5LZF|1|A|G|1475
5LZF|1|A|U|1476
5LZF|1|A|A|1477
5LZF|1|A|G|1478
5LZF|1|A|G|1479
*
5LZF|1|A|C|1512
5LZF|1|A|U|1513
5LZF|1|A|G|1514
5LZF|1|A|A|1515
5LZF|1|A|G|1516
5LZF|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains