3D structure

PDB id
5LZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CCC*G(2MG)G
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZF_079 not in the Motif Atlas
Homologous match to IL_5J7L_322
Geometric discrepancy: 0.1418
The information below is about IL_5J7L_322
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZF|1|A|C|2064
5LZF|1|A|C|2065
5LZF|1|A|C|2066
*
5LZF|1|A|G|2444
5LZF|1|A|2MG|2445
5LZF|1|A|G|2446

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain y
Selenocysteine transfer RNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2037 s