IL_5LZF_091

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5LZF|1|A|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_091 not in the Motif Atlas

Geometric match to IL_8GLP_013

Geometric discrepancy: 0.296

The information below is about IL_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5LZF|1|A|U|2401
5LZF|1|A|U|2402
5LZF|1|A|C|2403
*
5LZF|1|A|G|2414
5LZF|1|A|G|2415

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15