3D structure

PDB id
5LZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CU*AAG
Length
5 nucleotides
Bulged bases
5LZF|1|A|A|2800
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZF_108 not in the Motif Atlas
Geometric match to IL_4WF9_022
Geometric discrepancy: 0.3365
The information below is about IL_4WF9_022
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
134

Unit IDs

5LZF|1|A|C|2795
5LZF|1|A|U|2796
*
5LZF|1|A|A|2799
5LZF|1|A|A|2800
5LZF|1|A|G|2801

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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