IL_5LZF_186

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_186 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1455

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5LZF|1|A|G|1666
5LZF|1|A|G|1667
5LZF|1|A|A|1668
5LZF|1|A|A|1669
5LZF|1|A|C|1670
5LZF|1|A|U|1671
5LZF|1|A|A|1672
5LZF|1|A|G|1673
5LZF|1|A|G|1674
*
5LZF|1|A|C|1990
5LZF|1|A|U|1991
5LZF|1|A|G|1992
5LZF|1|A|U|1993
5LZF|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14