IL_5LZF_190

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAGG*CCGACCUUGAAAUACCACCC

Length

39 nucleotides

Bulged bases

5LZF|1|A|U|2111, 5LZF|1|A|U|2118, 5LZF|1|A|C|2164, 5LZF|1|A|A|2171, 5LZF|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZF|1|A|G|2110
5LZF|1|A|U|2111
5LZF|1|A|G|2112
5LZF|1|A|U|2113
5LZF|1|A|A|2114
5LZF|1|A|G|2115
5LZF|1|A|G|2116
5LZF|1|A|A|2117
5LZF|1|A|U|2118
5LZF|1|A|A|2119
5LZF|1|A|G|2120
5LZF|1|A|G|2121
5LZF|1|A|U|2122
5LZF|1|A|G|2123
5LZF|1|A|G|2124
5LZF|1|A|G|2125
5LZF|1|A|A|2126
5LZF|1|A|G|2127
5LZF|1|A|G|2128
*
5LZF|1|A|C|2160
5LZF|1|A|C|2161
5LZF|1|A|G|2162
5LZF|1|A|A|2163
5LZF|1|A|C|2164
5LZF|1|A|C|2165
5LZF|1|A|U|2166
5LZF|1|A|U|2167
5LZF|1|A|G|2168
5LZF|1|A|A|2169
5LZF|1|A|A|2170
5LZF|1|A|A|2171
5LZF|1|A|U|2172
5LZF|1|A|A|2173
5LZF|1|A|C|2174
5LZF|1|A|C|2175
5LZF|1|A|A|2176
5LZF|1|A|C|2177
5LZF|1|A|C|2178
5LZF|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain v

Transfer RNA; tRNA