IL_5LZS_068

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGUCU*ACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_068 not in the Motif Atlas

Geometric match to IL_5TBW_011

Geometric discrepancy: 0.308

The information below is about IL_5TBW_011

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

5LZS|1|5|G|1752
5LZS|1|5|G|1753
5LZS|1|5|U|1754
5LZS|1|5|C|1755
5LZS|1|5|U|1756
*
5LZS|1|5|A|1776
5LZS|1|5|C|1777
5LZS|1|5|C|1778

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10 (Predicted)

Chain J

uL5