IL_5LZS_103

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5LZS|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_103 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0819

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5LZS|1|5|A|2850
5LZS|1|5|G|2851
5LZS|1|5|U|2852
5LZS|1|5|C|2853
5LZS|1|5|G|2854
5LZS|1|5|G|2855
*
5LZS|1|5|C|3837
5LZS|1|5|U|3838
5LZS|1|5|G|3839
5LZS|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14