IL_5LZS_199

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_199 not in the Motif Atlas

Geometric match to IL_7LYF_004

Geometric discrepancy: 0.3215

The information below is about IL_7LYF_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5LZS|1|9|G|535
5LZS|1|9|A|536
5LZS|1|9|C|537
*
5LZS|1|9|G|546
5LZS|1|9|G|547
5LZS|1|9|C|548
5LZS|1|9|C|549

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain ee

eS30