IL_5LZS_221

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

5LZS|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_221 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.123

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5LZS|1|9|G|952
5LZS|1|9|C|953
5LZS|1|9|U|954
5LZS|1|9|A|955
5LZS|1|9|G|956
*
5LZS|1|9|C|967
5LZS|1|9|U|968
5LZS|1|9|U|969
5LZS|1|9|G|970
5LZS|1|9|G|971
5LZS|1|9|A|972
5LZS|1|9|C|973
5LZS|1|9|C|974

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain OO

uS11