IL_5LZS_244

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

5LZS|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_244 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3543

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5LZS|1|9|C|1395
5LZS|1|9|A|1396
5LZS|1|9|U|1397
5LZS|1|9|G|1398
5LZS|1|9|C|1399
*
5LZS|1|9|G|1447
5LZS|1|9|A|1448
5LZS|1|9|G|1449
5LZS|1|9|G|1450

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS4

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1