IL_5LZS_262

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_262 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1653

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZS|1|9|C|1742
5LZS|1|9|G|1743
5LZS|1|9|G|1744
5LZS|1|9|A|1745
5LZS|1|9|U|1746
*
5LZS|1|9|A|1788
5LZS|1|9|G|1789
5LZS|1|9|A|1790
5LZS|1|9|A|1791
5LZS|1|9|G|1792

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain W

uL24