IL_5LZT_104

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5LZT|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_104 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.085

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5LZT|1|5|A|2850
5LZT|1|5|G|2851
5LZT|1|5|U|2852
5LZT|1|5|C|2853
5LZT|1|5|G|2854
5LZT|1|5|G|2855
*
5LZT|1|5|C|3837
5LZT|1|5|U|3838
5LZT|1|5|G|3839
5LZT|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14