IL_5LZT_105

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5LZT|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_105 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0843

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5LZT|1|5|C|2867
5LZT|1|5|G|2868
5LZT|1|5|U|2869
5LZT|1|5|A|2870
5LZT|1|5|A|2871
5LZT|1|5|C|2872
*
5LZT|1|5|G|2877
5LZT|1|5|G|2878
5LZT|1|5|A|2879
5LZT|1|5|U|2880
5LZT|1|5|A|2881
5LZT|1|5|A|2882
5LZT|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43