IL_5LZT_148

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

5LZT|1|5|U|4634, 5LZT|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_148 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2589

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5LZT|1|5|U|4632
5LZT|1|5|G|4633
5LZT|1|5|U|4634
5LZT|1|5|A|4635
5LZT|1|5|U|4636
5LZT|1|5|G|4637
*
5LZT|1|5|C|4662
5LZT|1|5|G|4663
5LZT|1|5|A|4664
5LZT|1|5|A|4665
5LZT|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31