IL_5LZT_177

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

5LZT|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_177 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.0941

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5LZT|1|9|G|41
5LZT|1|9|A|42
5LZT|1|9|U|43
5LZT|1|9|U|44
5LZT|1|9|A|45
5LZT|1|9|A|46
5LZT|1|9|G|47
*
5LZT|1|9|C|479
5LZT|1|9|G|480
5LZT|1|9|C|481

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain XX

uS12

Chain ii

eRF1

Chain jj

eRF3a