IL_5LZU_031

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUCCC*GUCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_031 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2433

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5LZU|1|5|C|519
5LZU|1|5|U|520
5LZU|1|5|C|521
5LZU|1|5|C|522
5LZU|1|5|C|523
*
5LZU|1|5|G|638
5LZU|1|5|U|639
5LZU|1|5|C|640
5LZU|1|5|G|641
5LZU|1|5|G|642

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13