IL_5LZU_048

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

5LZU|1|5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_048 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2568

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5LZU|1|5|G|1360
5LZU|1|5|G|1361
*
5LZU|1|5|C|1376
5LZU|1|5|G|1377
5LZU|1|5|C|1378
5LZU|1|5|C|1379

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

Ribosomal protein L15